FastQCFastQC Report
Mon 4 Sep 2023
EGAF00007987253

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007987253
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences90885679
Sequences flagged as poor quality0
Sequence length8
%GC54

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CCTGTGCG2715755029.881000283884106No Hit
GGACACGT2528723627.823124917183044No Hit
TACTCTTC2293226725.23199172005966No Hit
ATGAGAAA1270965113.984217469509142No Hit
AGGAGAAA15597271.7161416596777586No Hit
TACTCTTA1340120.14745117324809776No Hit
GTGAGAAA1281970.14105302552671692No Hit
CCTGTGCA1267150.13942240559153438No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)