FastQCFastQC Report
Mon 4 Sep 2023
EGAF00007987256

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007987256
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences91720509
Sequences flagged as poor quality0
Sequence length8
%GC54

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CCTGTGCG2741985229.89500636111821No Hit
GGACACGT2548064827.780752939345334No Hit
TACTCTTC2315842325.24890371029232No Hit
ATGAGAAA1287307214.035107458899951No Hit
AGGAGAAA15392251.678168837898621No Hit
TACTCTTA1349710.14715465654469928No Hit
GTGAGAAA1296960.14140348915856976No Hit
CCTGTGCA1289810.14062394703893324No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)