FastQCFastQC Report
Mon 4 Sep 2023
EGAF00007987259

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007987259
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences92384953
Sequences flagged as poor quality0
Sequence length8
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
ATCTCTGT2343552025.367247846085935No Hit
CCTAGACC2290321724.79106851956725No Hit
TAGCTCTA2270945624.581336313501183No Hit
GGAGAGAG1941018621.010116225312146No Hit
GGAGCGAG28869773.1249428681313507No Hit
CCTAGACA1858880.20121025552721772No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)