FastQCFastQC Report
Mon 4 Sep 2023
EGAF00007987263

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007987263
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences92043429
Sequences flagged as poor quality0
Sequence length26
%GC50

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTTCGTTATCGGAATTAACCAGACA3340130.3628863066368377No Hit
GTCTCGTTCGTTATCGGAATTAACCA2172010.23597664967479645No Hit
CCACCTACTAAGAACGGCCATGCACC1916280.20819302592475125No Hit
CCTCTATATAAATGCGTAGGGGTTTT1499950.16296111697446647No Hit
GCTGCTTTTAGGCCTACTATGGGTGT1228540.13347394956352615No Hit
ACGGGCTGTTAATTGTCAGTTCAGTG1215100.1320137692827589No Hit
AGTTGGTTGATTGTAGATATTGGGCT1003470.10902136207898122No Hit
TGTTCCGTTGGTCAAGTTATTGGATC957030.10397591771597298No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)