FastQCFastQC Report
Mon 4 Sep 2023
EGAF00007987269

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007987269
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences92683401
Sequences flagged as poor quality0
Sequence length26
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTTCGTTATCGGAATTAACCAGACA3355290.3620162794846081No Hit
GTCTCGTTCGTTATCGGAATTAACCA2178900.23509063936917896No Hit
CCACCTACTAAGAACGGCCATGCACC1924070.20759596424391027No Hit
CCTCTATATAAATGCGTAGGGGTTTT1514920.16345105851262406No Hit
GCTGCTTTTAGGCCTACTATGGGTGT1241190.13391718329369462No Hit
ACGGGCTGTTAATTGTCAGTTCAGTG1222950.1319491933620347No Hit
AGTTGGTTGATTGTAGATATTGGGCT1009270.10889436394333438No Hit
TGTTCCGTTGGTCAAGTTATTGGATC968910.10453975464279736No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)