FastQCFastQC Report
Mon 4 Sep 2023
EGAF00007987274

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007987274
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences102432501
Sequences flagged as poor quality0
Sequence length8
%GC50

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGTTCCTC2733502526.68589044799365ABI Solid3 Adapter A (100% over 8bp)
CCGGGTAT2705345226.41100406207987No Hit
ATCATGCA2490124924.309910191492833No Hit
TAACAAGG2199672721.474362907530686No Hit
GGTTCCTA1390420.1357401202182889No Hit
TAACAAGA1138010.11109852721452149No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)