FastQCFastQC Report
Mon 4 Sep 2023
EGAF00007987280

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007987280
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences103242615
Sequences flagged as poor quality0
Sequence length8
%GC50

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGTTCCTC2756397126.698249555186106ABI Solid3 Adapter A (100% over 8bp)
CCGGGTAT2714664326.294028875576238No Hit
ATCATGCA2513172624.34239582172536No Hit
TAACAAGG2218607421.48926003085063No Hit
GGTTCCTA1403210.13591383751757935No Hit
TAACAAGA1144690.11087378985896473No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)