FastQCFastQC Report
Mon 4 Sep 2023
EGAF00007987286

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007987286
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences101837689
Sequences flagged as poor quality0
Sequence length8
%GC52

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTCCCGT3308724632.49017758052228No Hit
ACAAGGTA2561860125.15630632584367No Hit
TACTATAG2183425521.440249886267548No Hit
GTGGTACC2007177519.70957432076056No Hit
TACTCTAG1398470.1373234225690255No Hit
CGTCCCGA1107670.10876817913650809No Hit
GTGGTACA1079860.10603736304346026No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)