FastQCFastQC Report
Mon 4 Sep 2023
EGAF00007987292

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007987292
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences102536262
Sequences flagged as poor quality0
Sequence length8
%GC52

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTCCCGT3325712932.4345049754203No Hit
ACAAGGTA2581481725.176280563065585No Hit
TACTATAG2197175721.42827968509326No Hit
GTGGTACC2021499719.714973615870647No Hit
TACTCTAG1361610.1327930210680003No Hit
CGTCCCGA1122150.10943933181414396No Hit
GTGGTACA1088330.10614098649314914No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)