FastQCFastQC Report
Mon 4 Sep 2023
EGAF00007987302

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007987302
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences89964243
Sequences flagged as poor quality0
Sequence length26
%GC51

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTTCGTTATCGGAATTAACCAGACA2578600.286624987218533No Hit
CCACCTACTAAGAACGGCCATGCACC2438560.27105880277345296No Hit
GTCTCGTTCGTTATCGGAATTAACCA2246540.24971476723257705No Hit
CCTCTATATAAATGCGTAGGGGTTTT976540.10854757039416205No Hit
GTGGGTCGCGTAACTAGTTAGCATGC934910.10392017637496268No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)