FastQCFastQC Report
Mon 4 Sep 2023
EGAF00007987310

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007987310
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences101346647
Sequences flagged as poor quality0
Sequence length8
%GC52

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CAGCCACT3165602531.23539449706708No Hit
GTCGATGC2630147725.951995234731346No Hit
TGATTCTA2076897420.493005555477332No Hit
ACTAGGAG1986329819.59936375596126No Hit
ACTCGGAG13453711.32749433733116No Hit
CAGCCACA3749820.36999941399146635No Hit
ACGAGGAG1325110.13075025560539758No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)