FastQCFastQC Report
Mon 4 Sep 2023
EGAF00007987316

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007987316
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences102124520
Sequences flagged as poor quality0
Sequence length8
%GC52

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CAGCCACT3180683631.145151037184803No Hit
GTCGATGC2655981226.007282090530264No Hit
TGATTCTA2088853220.453983039528605No Hit
ACTAGGAG2010125819.68308688256258No Hit
ACTCGGAG12850941.2583598924136927No Hit
CAGCCACA3783140.3704438463945779No Hit
ACGAGGAG1260620.1234395030693902No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)