FastQCFastQC Report
Thu 9 May 2024
EGAF00007987335

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007987335
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences98354692
Total Bases2.5 Gbp
Sequences flagged as poor quality0
Sequence length26
%GC51

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTTCGTTATCGGAATTAACCAGACA3152000.3204727640243132No Hit
CCACCTACTAAGAACGGCCATGCACC1979130.201223750464289No Hit
GTCTCGTTCGTTATCGGAATTAACCA1925580.19577917035213735No Hit
AAGCCGCAGGCTCCACTCCTGGTGGT1153390.11726842680774192No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)