FastQCFastQC Report
Mon 4 Sep 2023
EGAF00007987337

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007987337
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences98474344
Sequences flagged as poor quality0
Sequence length8
%GC51

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TTCCCGAC2829519828.73357348793306No Hit
GCAGTAGA2699183327.410015546790547No Hit
CAGTACTG2243498722.782570656170098No Hit
AGTAGTCT1986827220.176089723430906No Hit
CAGTACTA1155570.11734731637308496No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)