FastQCFastQC Report
Mon 4 Sep 2023
EGAF00007987340

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007987340
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences99114164
Sequences flagged as poor quality0
Sequence length8
%GC51

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TTCCCGAC2849464528.749316797950293No Hit
GCAGTAGA2713660927.379143307913083No Hit
CAGTACTG2258010322.781913390300097No Hit
AGTAGTCT1999295820.17164569939772No Hit
CAGTACTA1165330.11757451740197293No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)