FastQCFastQC Report
Mon 4 Sep 2023
EGAF00007987343

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007987343
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences98050656
Sequences flagged as poor quality0
Sequence length8
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TGTGCGGG3496781335.66300770083578No Hit
CAACGCCT2890084329.475420337830272No Hit
ACCATAAC2151394121.94165942143212No Hit
GTGTATTA1139300711.619511245289374No Hit
TGTGCGGA2784000.2839348672996129No Hit
CAACGCCA1423270.1451566015019828No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)