FastQCFastQC Report
Mon 4 Sep 2023
EGAF00007987346

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007987346
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences97642034
Sequences flagged as poor quality0
Sequence length8
%GC56

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TGTGCGGG3477459335.61436768103376No Hit
CAACGCCT2879350529.48884186496975No Hit
ACCATAAC2141179721.92887235429774No Hit
GTGTATTA1136985911.644430717205257No Hit
TGTGCGGA2769470.28363501727135265No Hit
CAACGCCA1422740.14570978724183478No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)