FastQCFastQC Report
Mon 4 Sep 2023
EGAF00007987347

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007987347
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences97642034
Sequences flagged as poor quality0
Sequence length26
%GC51

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CCACCTACTAAGAACGGCCATGCACC2201500.22546642156184496No Hit
CCTCTATATAAATGCGTAGGGGTTTT2200770.2253916586784745No Hit
CGTTCGTTATCGGAATTAACCAGACA2181570.2234252924309217No Hit
TTCGGTCTTGATTAATGAAAACATTC1858560.19034425276310815No Hit
GTCTCGTTCGTTATCGGAATTAACCA1786270.18294067901125452No Hit
AAGCCGCAGGCTCCACTCCTGGTGGT1041910.10670711755144306No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)