FastQCFastQC Report
Mon 4 Sep 2023
EGAF00007987349

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007987349
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences96808037
Sequences flagged as poor quality0
Sequence length8
%GC56

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TGTGCGGG3453637935.67511548653755No Hit
CAACGCCT2851392729.45409067637638No Hit
ACCATAAC2122392421.923721064605413No Hit
GTGTATTA1122546511.595592006477727No Hit
TGTGCGGA2737600.2827864384854741No Hit
CAACGCCA1397990.14440846476413938No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)