FastQCFastQC Report
Mon 4 Sep 2023
EGAF00007987350

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007987350
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences96808037
Sequences flagged as poor quality0
Sequence length26
%GC51

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CCTCTATATAAATGCGTAGGGGTTTT2186530.22586244569756125No Hit
CCACCTACTAAGAACGGCCATGCACC2165770.2237179956453409No Hit
CGTTCGTTATCGGAATTAACCAGACA2161170.2232428284854077No Hit
TTCGGTCTTGATTAATGAAAACATTC1849180.1910151323489805No Hit
GTCTCGTTCGTTATCGGAATTAACCA1773820.1832306547027702No Hit
AAGCCGCAGGCTCCACTCCTGGTGGT1020930.10545921925883076No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)