FastQCFastQC Report
Mon 4 Sep 2023
EGAF00007987361

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007987361
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences78978700
Sequences flagged as poor quality0
Sequence length8
%GC52

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CAGAGGCC2478062331.37633691109122No Hit
GGTCAATA1897289124.022794753522152No Hit
TCAGCCGT1825202723.11006258649484No Hit
ATCTTTAG1603013420.29678128406773No Hit
CAGAGGCA1099180.13917423305270915No Hit
TCAGCCGA917230.11613637601024074No Hit
ATCTTTAA830040.10509669062671327No Hit
GGGCAATA814550.10313540232999531No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)