FastQCFastQC Report
Mon 4 Sep 2023
EGAF00007987367

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007987367
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences93848686
Sequences flagged as poor quality0
Sequence length8
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CAGCCCAC3160017433.67140803654939No Hit
GGCAATGG2487636526.506886841228656No Hit
ACATTACT1877287420.003342401618706No Hit
TTTGGGTA1755469918.70532209689116No Hit
GGCAATGA1647670.1755666563088587No Hit
CAGCCCAA1252920.1335042666447136No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)