FastQCFastQC Report
Mon 4 Sep 2023
EGAF00007987368

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007987368
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences93848686
Sequences flagged as poor quality0
Sequence length26
%GC51

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTTCGTTATCGGAATTAACCAGACA5456980.5814657863190541No Hit
GTCTCGTTCGTTATCGGAATTAACCA5343120.5693334907214364No Hit
CCACCTACTAAGAACGGCCATGCACC4636700.49406125941923146No Hit
CCACCAACTAAGAACGGCCATGCACC1552280.16540242236316446No Hit
ACGCCAGAGTCTCGTTCGTTATCGGA1259540.13420965744794763No Hit
ATCCACCAACTAAGAACGGCCATGCA1223290.13034705675048025No Hit
ACCTTTAAGTTTCAGCTTTGCAACCA1098600.11706077589621233No Hit
ACGGCCATGCACCACCACCCACGGAA1094660.11664095115833588No Hit
TGTTCGTTATCGGAATTAACCAGACA1058180.11275384292540867No Hit
GTGGGTCGCGTAACTAGTTAGCATGC1035750.11036382544556884No Hit
ACGGGCTTTTTAACTGCAGCAACTTT967210.10306057987855045No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)