FastQCFastQC Report
Mon 4 Sep 2023
EGAF00007987373

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007987373
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences93087681
Sequences flagged as poor quality0
Sequence length8
%GC54

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CAGCCCAC3134596033.6735856595246No Hit
GGCAATGG2464151226.471292157337125No Hit
ACATTACT1861225719.994328787715745No Hit
TTTGGGTA1740238318.694614381896567No Hit
GGCAATGA1635240.17566663842447638No Hit
CAGCCCAA1230500.13218720101105536No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)