FastQCFastQC Report
Mon 4 Sep 2023
EGAF00007987374

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007987374
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences93087681
Sequences flagged as poor quality0
Sequence length26
%GC51

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTTCGTTATCGGAATTAACCAGACA5407080.5808588141754224No Hit
GTCTCGTTCGTTATCGGAATTAACCA5302590.5696339132135002No Hit
CCACCTACTAAGAACGGCCATGCACC4605150.49471100262987533No Hit
CCACCAACTAAGAACGGCCATGCACC1548190.16631523992954556No Hit
ACGCCAGAGTCTCGTTCGTTATCGGA1241970.1334193726450227No Hit
ATCCACCAACTAAGAACGGCCATGCA1219060.13095825214509318No Hit
ACGGCCATGCACCACCACCCACGGAA1094330.1175590570356995No Hit
ACCTTTAAGTTTCAGCTTTGCAACCA1092780.11739254735543363No Hit
TGTTCGTTATCGGAATTAACCAGACA1051250.11293116218031041No Hit
GTGGGTCGCGTAACTAGTTAGCATGC1022580.10985127022339293No Hit
ACGGGCTTTTTAACTGCAGCAACTTT963590.10351423406927496No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)