FastQCFastQC Report
Mon 4 Sep 2023
EGAF00007987377

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007987377
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences93805371
Sequences flagged as poor quality0
Sequence length26
%GC51

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTTCGTTATCGGAATTAACCAGACA5452290.5812343090674413No Hit
GTCTCGTTCGTTATCGGAATTAACCA5336310.5688704114820888No Hit
CCACCTACTAAGAACGGCCATGCACC4625630.4931092911513563No Hit
CCACCAACTAAGAACGGCCATGCACC1561950.16650965540128826No Hit
ACGCCAGAGTCTCGTTCGTTATCGGA1253520.13362987498871465No Hit
ATCCACCAACTAAGAACGGCCATGCA1225720.13066629201860946No Hit
ACGGCCATGCACCACCACCCACGGAA1105320.11783120606175099No Hit
ACCTTTAAGTTTCAGCTTTGCAACCA1101670.11744210254229473No Hit
TGTTCGTTATCGGAATTAACCAGACA1063000.1133197373101376No Hit
GTGGGTCGCGTAACTAGTTAGCATGC1029300.10972719248666477No Hit
ACGGGCTTTTTAACTGCAGCAACTTT983460.10484047869711No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)