FastQCFastQC Report
Mon 4 Sep 2023
EGAF00007987383

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007987383
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences98284913
Sequences flagged as poor quality0
Sequence length26
%GC50

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTTCGTTATCGGAATTAACCAGACA15440081.5709511794551827No Hit
GTCTCGTTCGTTATCGGAATTAACCA14449251.470139165713053No Hit
CCACCTACTAAGAACGGCCATGCACC14195601.4443315425227063No Hit
CCACCAACTAAGAACGGCCATGCACC4618030.46986153408916387No Hit
ACGGCCATGCACCACCACCCACGGAA2749550.2797530074631088No Hit
TGTTCGTTATCGGAATTAACCAGACA2517210.2561135705538041No Hit
ATCCACCAACTAAGAACGGCCATGCA2366450.24077449201181061No Hit
ACGGGCTTTTTAACTGCAGCAACTTT2328860.2369498968778657No Hit
ACGCCAGAGTCTCGTTCGTTATCGGA2252160.2291460541863633No Hit
GTGGGTCGCGTAACTAGTTAGCATGC1839030.18711213591856157No Hit
ACGAGCTTTTTAACTGCAGCAACTTT1704100.1733836809724805No Hit
GGGTTGCGTAACTAGTTAGCATGCCA1695190.17247713288406735No Hit
GCAGCAACTTTAATATACGCTATTGG1684380.17137726926613855No Hit
GCTCCACCAACTAAGAACGGCCATGC1402180.1426648258822796No Hit
GATCGCGTAACTAGTTAGCATGCCAG1396780.14211540279839288No Hit
CGCTTCACCAACTAAGAACGGCCATG1189280.12100331207496719No Hit
CCTACCAACTAAGAACGGCCATGCAC1178960.11995330351465032No Hit
AAGCCGCAGGCTCCACTCCTGGTGGT1159610.11798453746405616No Hit
GGGTCGCGTAACTAGTTAGCATGCCA1157430.11776273333019077No Hit
ACACCAACTAAGAACGGCCATGCACC1104130.11233972400219758No Hit
CGGACGTTATCGGAATTAACCAGACA1093780.11128666309141466No Hit
CCTCTATATAAATGCGTAGGGGTTTT1034120.10521655546462151No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)