FastQCFastQC Report
Mon 4 Sep 2023
EGAF00007987386

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007987386
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences97566113
Sequences flagged as poor quality0
Sequence length26
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTTCGTTATCGGAATTAACCAGACA15460601.5846280562596564No Hit
GTCTCGTTCGTTATCGGAATTAACCA14399881.4759099811632344No Hit
CCACCTACTAAGAACGGCCATGCACC14205161.4559522321033738No Hit
CCACCAACTAAGAACGGCCATGCACC4608050.47230025449512375No Hit
ACGGCCATGCACCACCACCCACGGAA2751590.2820231241558224No Hit
TGTTCGTTATCGGAATTAACCAGACA2509050.25716408318941636No Hit
ATCCACCAACTAAGAACGGCCATGCA2356620.2415408308825422No Hit
ACGGGCTTTTTAACTGCAGCAACTTT2332550.2390737857928193No Hit
ACGCCAGAGTCTCGTTCGTTATCGGA2251270.23074302447613138No Hit
GTGGGTCGCGTAACTAGTTAGCATGC1840270.18861774271974943No Hit
ACGAGCTTTTTAACTGCAGCAACTTT1696550.1738872184033815No Hit
GGGTTGCGTAACTAGTTAGCATGCCA1693100.17353361202367468No Hit
GCAGCAACTTTAATATACGCTATTGG1659290.17006826950254747No Hit
GCTCCACCAACTAAGAACGGCCATGC1399350.1434258224471851No Hit
GATCGCGTAACTAGTTAGCATGCCAG1392930.14276780709712192No Hit
CGCTTCACCAACTAAGAACGGCCATG1186160.1215749980733577No Hit
CCTACCAACTAAGAACGGCCATGCAC1184740.12142945573736241No Hit
GGGTCGCGTAACTAGTTAGCATGCCA1165320.11943901055072267No Hit
AAGCCGCAGGCTCCACTCCTGGTGGT1160630.11895831086352697No Hit
ACACCAACTAAGAACGGCCATGCACC1115680.11435117846705649No Hit
CGGACGTTATCGGAATTAACCAGACA1096940.11243042961032997No Hit
CCTCTATATAAATGCGTAGGGGTTTT1036840.10627050398123374No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)