FastQCFastQC Report
Mon 4 Sep 2023
EGAF00007987388

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007987388
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences99024070
Sequences flagged as poor quality0
Sequence length8
%GC51

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TCAAGGCC3309864733.42485013997102No Hit
GATGCCAA2309600423.323626265815978No Hit
CTCCTAGT2091119121.117280879285207No Hit
AGGTATTG2072361620.927857237134365No Hit
AGGTATTA1181460.11931038584861237No Hit
TCAAGGCA1170160.11816924915326144No Hit
GATGCAAA1151710.1163060657878433No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)