FastQCFastQC Report
Mon 4 Sep 2023
EGAF00007987389

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007987389
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences99024070
Sequences flagged as poor quality0
Sequence length26
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTTCGTTATCGGAATTAACCAGACA15584121.5737709023674749No Hit
GTCTCGTTCGTTATCGGAATTAACCA14546501.4689862777807456No Hit
CCACCTACTAAGAACGGCCATGCACC14307851.4448860766882234No Hit
CCACCAACTAAGAACGGCCATGCACC4626990.4672591219488353No Hit
ACGGCCATGCACCACCACCCACGGAA2760330.2787534384316863No Hit
TGTTCGTTATCGGAATTAACCAGACA2532930.255789324757102No Hit
ATCCACCAACTAAGAACGGCCATGCA2400120.2423774340925393No Hit
ACGGGCTTTTTAACTGCAGCAACTTT2354390.2377593649705572No Hit
ACGCCAGAGTCTCGTTCGTTATCGGA2274080.22964921558970458No Hit
GTGGGTCGCGTAACTAGTTAGCATGC1864070.18824413094715256No Hit
ACGAGCTTTTTAACTGCAGCAACTTT1729050.17460906222093275No Hit
GGGTTGCGTAACTAGTTAGCATGCCA1712420.1729296725533499No Hit
GCAGCAACTTTAATATACGCTATTGG1694750.17114525791557547No Hit
GCTCCACCAACTAAGAACGGCCATGC1415910.1429864476384378No Hit
GATCGCGTAACTAGTTAGCATGCCAG1399330.14131210724826804No Hit
CGCTTCACCAACTAAGAACGGCCATG1198170.12099785436005611No Hit
CCTACCAACTAAGAACGGCCATGCAC1186850.11985469795373993No Hit
AAGCCGCAGGCTCCACTCCTGGTGGT1169720.11812481551202651No Hit
GGGTCGCGTAACTAGTTAGCATGCCA1166620.11781176031241697No Hit
ACACCAACTAAGAACGGCCATGCACC1119070.11300989749259954No Hit
CGGACGTTATCGGAATTAACCAGACA1102400.11132646840308624No Hit
CCTCTATATAAATGCGTAGGGGTTTT1044410.10547031645942245No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)