FastQCFastQC Report
Mon 4 Sep 2023
EGAF00007987391

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007987391
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences95758537
Sequences flagged as poor quality0
Sequence length8
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CGATCACC2521285826.32961905004877No Hit
GATCTTGA2511913026.231739526262814No Hit
ACGGACAT2328622724.317651177147788No Hit
TTCAGGTG2099564121.92560753095048No Hit
CGATCACA1921820.20069437777646917No Hit
GATCTTAA1130500.11805735920965459No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)