FastQCFastQC Report
Mon 4 Sep 2023
EGAF00007987392

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007987392
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences95758537
Sequences flagged as poor quality0
Sequence length26
%GC51

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTTCGTTATCGGAATTAACCAGACA3976610.41527472375648344No Hit
GTCTCGTTCGTTATCGGAATTAACCA2213130.23111568632256776No Hit
CCACCTACTAAGAACGGCCATGCACC2108560.22019551113233904No Hit
CCTCTATATAAATGCGTAGGGGTTTT1656780.17301642776768822No Hit
ATCCACCAACTAAGAACGGCCATGCA1518620.15858847133389267No Hit
ACGCCAGAGTCTCGTTCGTTATCGGA1504380.15710139765397627No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)