FastQCFastQC Report
Mon 4 Sep 2023
EGAF00007987394

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007987394
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences95181968
Sequences flagged as poor quality0
Sequence length8
%GC49

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CGATCACC2503781426.305207305652683No Hit
GATCTTGA2496231426.225885558491502No Hit
ACGGACAT2317228924.345250982833218No Hit
TTCAGGTG2086453021.92067514300608No Hit
CGATCACA1904360.20007571181970096No Hit
GATCTTAA1120410.11771242216803081No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)