FastQCFastQC Report
Mon 4 Sep 2023
EGAF00007987403

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007987403
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences100783421
Sequences flagged as poor quality0
Sequence length8
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
AGCATCCG3188410931.63626386526411No Hit
CCTCATTC2573826325.538191445198116ABI Solid3 Adapter A (100% over 8bp)
TAATGGGA2308389322.904454692007327No Hit
GTGGCAAT1870761618.56219585957496No Hit
CCTCATTA2982410.2959226795843733No Hit
TAATGGAA2699040.2678059519333046No Hit
AGCATCCA1834050.18197933566871083No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)