FastQCFastQC Report
Mon 4 Sep 2023
EGAF00007987416

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007987416
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences91254310
Sequences flagged as poor quality0
Sequence length26
%GC51

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GTCTCGTTCGTTATCGGAATTAACCA2800610.3069016685348889No Hit
CCACCTACTAAGAACGGCCATGCACC2593380.2841926041630253No Hit
CGTTCGTTATCGGAATTAACCAGACA2570850.2817236796815405No Hit
TTCGGTCTTGATTAATGAAAACATTC2295580.251558529125912No Hit
GCAGCCATACTCCCCCCGGAACCCAA2281100.24997175475876152No Hit
CCTCTATATAAATGCGTAGGGGTTTT1122550.12301336780695618No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)