FastQCFastQC Report
Mon 4 Sep 2023
EGAF00007987418

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007987418
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences90722347
Sequences flagged as poor quality0
Sequence length8
%GC53

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
AGGCCCGA2941051932.41816374084767No Hit
TACGTGAC2179384224.02257296099273RNA PCR Primer, Index 17 (100% over 8bp)
CCAAGATG2027406522.3473771021378No Hit
GTTTATCT1836764220.24599517911502No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)