FastQCFastQC Report
Mon 4 Sep 2023
EGAF00007987419

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007987419
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences90722347
Sequences flagged as poor quality0
Sequence length26
%GC51

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GTCTCGTTCGTTATCGGAATTAACCA2797820.30839369708986913No Hit
CCACCTACTAAGAACGGCCATGCACC2571220.28341638912846906No Hit
CGTTCGTTATCGGAATTAACCAGACA2565140.2827462124629558No Hit
GCAGCCATACTCCCCCCGGAACCCAA2281810.2515157593971858No Hit
TTCGGTCTTGATTAATGAAAACATTC2273480.2505975732748625No Hit
CCTCTATATAAATGCGTAGGGGTTTT1116480.12306559926188859No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)