FastQCFastQC Report
Mon 4 Sep 2023
EGAF00007987425

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007987425
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences91406652
Sequences flagged as poor quality0
Sequence length26
%GC51

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GTCTCGTTCGTTATCGGAATTAACCA2809410.3073529046879433No Hit
CGTTCGTTATCGGAATTAACCAGACA2591490.2835121890253677No Hit
CCACCTACTAAGAACGGCCATGCACC2588010.28313147275102035No Hit
TTCGGTCTTGATTAATGAAAACATTC2298480.2514565351326947No Hit
GCAGCCATACTCCCCCCGGAACCCAA2293390.2508996828808477No Hit
CCTCTATATAAATGCGTAGGGGTTTT1137320.12442420492547959No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)