FastQCFastQC Report
Mon 4 Sep 2023
EGAF00007987427

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007987427
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences93751054
Sequences flagged as poor quality0
Sequence length8
%GC51

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GCATCTCC2658245128.354295622105752No Hit
CTGCGATG2635278328.109319176294274No Hit
AACGTCAA2240261323.895851880235927No Hit
TGTAAGGT1731408718.468151835391634No Hit
GCATCTCA2381890.2540654102939472No Hit
AACGTAAA1450260.15469266084197836No Hit
CTGCGATA956590.10203511951982962No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)