FastQCFastQC Report
Mon 4 Sep 2023
EGAF00007987428

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007987428
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences93751054
Sequences flagged as poor quality0
Sequence length26
%GC51

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AAGCCGCAGGCTCCACTCCTGGTGGT1667470.17786146702948002No Hit
AGGTCCGTCTTGCGCCGGTCCAAGAA1500680.16007073371143113No Hit
CCACCTACTAAGAACGGCCATGCACC1286090.1371813910486809No Hit
CCTCTATATAAATGCGTAGGGGTTTT1228940.1310854595832064No Hit
CGTTCGTTATCGGAATTAACCAGACA1019910.10878917691954695No Hit
ACGGGTCGCGTAACTAGTTAGCATGC975780.10408202984043252No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)