FastQCFastQC Report
Mon 4 Sep 2023
EGAF00007987433

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007987433
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences92769164
Sequences flagged as poor quality0
Sequence length8
%GC51

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GCATCTCC2629438028.34387943821505No Hit
CTGCGATG2607799128.110624129371264No Hit
AACGTCAA2212852023.85331401714475No Hit
TGTAAGGT1712169618.456236169165006No Hit
GCATCTCA2336550.2518670967003648No Hit
AACGTAAA1445190.1557834454560785No Hit
CTGCGATA944950.1018603552361429No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)