FastQCFastQC Report
Mon 4 Sep 2023
EGAF00007987436

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007987436
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences93933716
Sequences flagged as poor quality0
Sequence length8
%GC51

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GCATCTCC2661281528.33148323441181No Hit
CTGCGATG2637523528.07856020515573No Hit
AACGTCAA2244322123.892614873236784No Hit
TGTAAGGT1732468018.443516064029662No Hit
GCATCTCA2386290.25403977417437634No Hit
AACGTAAA1472940.15680631648810742No Hit
CTGCGATA957260.10190803055209698No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)