FastQCFastQC Report
Mon 4 Sep 2023
EGAF00007987442

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007987442
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences110129617
Sequences flagged as poor quality0
Sequence length8
%GC50

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CTGCAAGC2934044426.641737980438084No Hit
AAAGTGCT2733682524.82240994264059No Hit
GCTACCTG2656613024.12260273274173No Hit
TGCTGTAA2574801623.37973807717864No Hit
GCTACCTA1576830.14317946824422353No Hit
TGCTCTAA1204330.10935568767119204No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)