FastQCFastQC Report
Mon 4 Sep 2023
EGAF00007987448

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007987448
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences110939502
Sequences flagged as poor quality0
Sequence length8
%GC50

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CTGCAAGC2956850726.652821102441944No Hit
AAAGTGCT2751804824.80455338622306No Hit
GCTACCTG2677003424.13029941309814No Hit
TGCTGTAA2586984023.318871577411624No Hit
GCTACCTA1591230.1434322284951306No Hit
TGCTCTAA1210840.10914417120783543No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)