FastQCFastQC Report
Mon 4 Sep 2023
EGAF00007987452

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007987452
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences97854597
Sequences flagged as poor quality0
Sequence length26
%GC51

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GTCTCGTTCGTTATCGGAATTAACCA5269810.5385347404782629No Hit
CGTTCGTTATCGGAATTAACCAGACA2208470.22568893723000058No Hit
AAGCCGCAGGCTCCACTCCTGGTGGT1864630.19055108877511395No Hit
AGGTCCGTCTTGCGCCGGTCCAAGAA1122780.1147396274086132No Hit
CCACCTACTAAGAACGGCCATGCACC1121840.11464356651532681No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)