FastQCFastQC Report
Mon 4 Sep 2023
EGAF00007987467

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007987467
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences90610627
Sequences flagged as poor quality0
Sequence length26
%GC51

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTTCGTTATCGGAATTAACCAGACA4370860.482378297636104No Hit
CCACCTACTAAGAACGGCCATGCACC3397990.3750100967737482No Hit
TTGCCGTATCGTTCCGCCTGGGCGGG2788430.3077376343505492No Hit
GTCTCGTTCGTTATCGGAATTAACCA2089150.23056346359903238No Hit
AGGCCGTATCGTTCCGCCTGGGCGGG1201320.13258047535638395No Hit
ATGAGGGTAATAATGACTTGTTGGTT933750.10305082647756095No Hit
GGGTTGCGTAACTAGTTAGCATGCCA914440.10091972986788844No Hit
ACGGGCTGTTAATTGTCAGTTCAGTG907470.1001505044215178No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)