FastQCFastQC Report
Mon 4 Sep 2023
EGAF00007987470

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007987470
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences90348503
Sequences flagged as poor quality0
Sequence length26
%GC51

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTTCGTTATCGGAATTAACCAGACA4343310.4807284964090662No Hit
CCACCTACTAAGAACGGCCATGCACC3369460.37294032420216194No Hit
TTGCCGTATCGTTCCGCCTGGGCGGG2780770.3077826314399476No Hit
GTCTCGTTCGTTATCGGAATTAACCA2071440.2292721994519378No Hit
AGGCCGTATCGTTCCGCCTGGGCGGG1208280.13373547539575725No Hit
ATGAGGGTAATAATGACTTGTTGGTT928490.10276761309481795No Hit
GGGTTGCGTAACTAGTTAGCATGCCA907040.10039347303850736No Hit
ACGGGCTGTTAATTGTCAGTTCAGTG906420.10032484987604055No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)