FastQCFastQC Report
Mon 4 Sep 2023
EGAF00007987473

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007987473
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences91417481
Sequences flagged as poor quality0
Sequence length26
%GC51

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTTCGTTATCGGAATTAACCAGACA4406230.4819898723746282No Hit
CCACCTACTAAGAACGGCCATGCACC3420700.3741844516586494No Hit
TTGCCGTATCGTTCCGCCTGGGCGGG2792930.3055137780486426No Hit
GTCTCGTTCGTTATCGGAATTAACCA2110930.23091097861250412No Hit
AGGCCGTATCGTTCCGCCTGGGCGGG1230290.13457929342857303No Hit
ATGAGGGTAATAATGACTTGTTGGTT937350.10253509391710323No Hit
GGGTTGCGTAACTAGTTAGCATGCCA924340.10111195253783027No Hit
ACGGGCTGTTAATTGTCAGTTCAGTG914980.1000880783402903No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)