FastQCFastQC Report
Mon 4 Sep 2023
EGAF00007987478

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007987478
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences101802712
Sequences flagged as poor quality0
Sequence length8
%GC51

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GAGCACCG2830022527.79908751350357No Hit
CCTACGTA2510442024.65987350120889No Hit
TGCTGAGT2485324424.413145300097703No Hit
ATAGTTAC2255361222.154234948082717No Hit
GAGCACCA1450360.14246771736297165No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)