FastQCFastQC Report
Mon 4 Sep 2023
EGAF00007987481

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007987481
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences101665388
Sequences flagged as poor quality0
Sequence length8
%GC51

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GAGCACCG2824728727.78456616916664No Hit
CCTACGTA2505972124.649215916040177No Hit
TGCTGAGT2480232524.396036338345553No Hit
ATAGTTAC2253080522.161726270104825No Hit
GAGCACCA1449350.14256080938775348No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)